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Installation
Tutorials
Benchmark across six cell lines
Train BRIDGE models for the RBPs in different cell lines
Evaluate trained models on held-out data
Run dynamic cross-cell-type prediction of RBP–RNA interactions
Motif discovery
RBP motif extraction and visualization
Variant-aware prediction
Catalog variants tutorial (variant_aware.py — ClinVar/TCGA/1000G batches)
Ribosnitch tutorial (variant_aware.py — ribosnitch mode)
GWAS tutorial (variant_aware.py — GWAS mode)
API
User
utils.BRIDGE
utils.attribution_utils
utils.conv_layer
utils.dataloaders
utils.datautils
utils.FeatureEncoding
utils.gen_transformer_embedding
utils.metrics
utils.resnet
utils.structureFeatures
utils.train_loop
utils.utils
utils.variant
utils.visualize
utils.motif_prior.motif_prior
main
motif_construction.run_finetune
variant_aware
Developer documentation
Contributing code
Release Notes
GitHub
Repository
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